Shinde, V. L., Meena, R. M., & Shenoy, B. D. (2025). Isolation, enumeration and phylogenetic analysis of pathogenic groups of bacteria from tarballs. Manuscript submitted for publication to Environmental Science and Pollution Research. 

Barnes, N., Harini, M., Shenoy, B. D., & Damare, S. R. (2025). Molecular characterisation of select fungi from the Arabian Sea.  MycoAsia [under review].

Shenoy, B. D. (2025). Do you believe in “new” fungal species?. Mycological Spectrum 2025/04. 

Vijaya Bhaskar, Y., Sravani, M., Srinivas, T. N. R., Anil Kumar, P., Bhumika, V., & Shenoy, B. D. (2025). Molecular characterization and identification of marine yeasts from coastal and offshore regions in the southeastern Arabian Sea. MycoAsia, 2025/02. 

Rao, R. S. P., Pinto, L., Suravajhala, R., Shenoy, B. D., Sashindran, V. K., & Ghate, S. D. (2025). Azole resistance: insights from Y132 substitutions in Candida sterol 14α-demethylase utilizing molecular dynamics simulations. Journal of Biomolecular Structure and Dynamics, 1–9. https://doi.org/10.1080/07391102.2025.2479847

Sharma, R., Shenoy, B. D., & Sridhar, K. R. (2024). Insights on marine fungal research in India. MycoIndia, 2024/04. https://mycoindia.org/articles-2024

Chopra, M., Behera, S., Jagadeesan, L., Rachuri, V., & Shenoy, B. D. (2024). Exploring fungal diversity and their ecological roles in the coastal waters of Ramakrishna Beach, Visakhapatnam, India. MycoAsia, 2024/01. https://doi.org/10.59265/mycoasia.2024-01 

Shenoy, B. D., Khandeparker, R. D. S., Fernandes, P., & Amberkar, U. (2024). Fungal diversity associated with Goa's tarballs: Insights from ITS region amplicon sequencing. Fungal Biology, 128(3), 1751–1757. https://doi.org/10.1016/j.funbio.2024.03.001 

Sharma, R., & Shenoy, B. D. (2024, February). Fungal taxonomy: Are we casual about species identification? MycoIndia, 2024/02. https://mycoindia.org/articles-2024

Sridhar, K. R., Shenoy, B. D., & Sharma, R. (2024). MycoIndia: Advancing academic insights into Indian mycology. MycoIndia 2024/01. https://mycoindia.org/articles-2024

Karunarathna, S. C., Maharachchikumbura, S. S. N., Ariyawansa, H. A., Shenoy, B. D., & Jeewon, R. (2021). Editorial: Emerging fungal plant pathogens. Frontiers in Cellular and Infection Microbiology, 11, 765549. https://doi.org/10.3389/fcimb.2021.765549 

Barnes, N. M., Damare, S. R., & Shenoy, B. D. (2021). Bacterial and fungal diversity in sediment and water column from the abyssal regions of the Indian Ocean. Frontiers in Marine Science, 8, 687860. https://doi.org/10.3389/fmars.2021.687860 

Parab, P. D., Khandeparker, R. D., Shenoy, B. D., & others. (2020). Phylogenetic diversity of culturable marine bacteria from mangrove sediments of Goa, India: A potential source of xylanases belonging to glycosyl hydrolase family 10. Applied Biochemistry and Microbiology, 56, 718–728. https://doi.org/10.1134/S0003683820060137 

Wijayawardene, N. N., Hyde, K. D., Al-Ani, L. K. T., Tedersoo, L., Haelewaters, D., Rajeshkumar, K. C., Zhao, R. L., Aptroot, A., Leontyev, D. V., Saxena, R. K., Tokarev, Y. S., Dai, D. Q., Letcher, P. M., Stephenson, S. L., Ertz, D., Lumbsch, H. T., Kukwa, M., Issi, I. V., Madrid, H., Phillips, A. J. L., Selbmann, L., Pfliegler, W. P., Horváth, E., Bensch, K., Kirk, P. M., Kolaríková, K., Raja, H. A., Radek, R., Papp, V., Dima, B., Ma, J., Malosso, E., Takamatsu, S., Rambold, G., Gannibal, P. B., Triebel, D., Gautam, A. K., Avasthi, S., Suetrong, S., Timdal, E., Fryar, S. C., Delgado, G., Réblová, M., Doilom, M., Dolatabadi, S., Pawlowska, J. Z., Humber, R. A., Kodsueb, R., Sánchez-Castro, I., Goto, B. T., Silva, D. K. A., de Souza, F. A., Oehl, F., da Silva, G. A., Silva, I. R., Blaszkowski, J., Jobim, K., Maia, L. C., Barbosa, F. R., Fiuza, P. O., Divakar, P. K., Shenoy, B. D., & Castañeda-Ruiz, R. F. (2020). Outline of fungi and fungus-like taxa. Mycosphere, 11(1), 1060–1456. https://doi.org/10.5943/mycosphere/11/1/8 

Shinde, V. L., Suneel, V., Rathore, C., Naik, B. G., Vignesh, V. S., Shenoy, B. D., & Sawant, S. S. (2020). Degradation of tarballs using associated bacterial consortia. 3 Biotech, 10, 109. https://doi.org/10.1007/s13205-020-2095-8

Fernandes, G. L., Shenoy, B. D., & Damare, S. R. (2020). Diversity of bacterial community in the oxygen minimum zones of Arabian Sea and Bay of Bengal as deduced by Illumina sequencing. Frontiers in Microbiology, 10, 3153. https://doi.org/10.3389/fmicb.2019.03153 

Fernandes, C., Khandeparker, R. D. S., & Shenoy, B. D. (2020). High abundance of Vibrio in tarball-contaminated seawater from Vagator beach, Goa, India. Marine Pollution Bulletin, 150, 110773. https://doi.org/10.1016/j.marpolbul.2019.110773 

Gawas, V. S., Shivaramu, M. S., Damare, S. R., Shenoy, B. D., & Deobagkar, D. D. (2019). Diversity and extracellular enzyme activities of heterotrophic bacteria from sediments of the Central Indian Ocean Basin. Scientific Reports, 9, 9403. https://doi.org/10.1038/s41598-019-45792-x 

Fernandes, G. L., Shenoy, B. D., Menezes, L. D., & Damare, S. R. (2019). Prokaryotic diversity in oxygen depleted waters of the Bay of Bengal inferred using culture-dependent and -independent methods. Indian Journal of Microbiology, 59, 193–199. https://doi.org/10.1007/s12088-019-00786-1 

Fernandes, C., Kankonkar, H., Meena, R. M., Menezes, G., Shenoy, B. D., & Khandeparker, R. (2019). Metagenomic analysis of tarball-associated bacteria from Goa, India. Marine Pollution Bulletin, 141, 398–403. https://doi.org/10.1016/j.marpolbul.2019.02.040 

Wijayawardene, N. N., Pawłowska, J., Letcher, P. M., Kirk, P. M., Humber, R. A., Schüßler, A., Wrzosek, M., Muszewska, A., Okrasińska, A., Istel, Ł., Gozdowski, D., Kosa, G., Ahrendt, S. R., Wurzbacher, C., Réblová, M., Vohník, M., Benítez-Páez, A., Medina, R. F., Richardson, M. J., ... Hyde, K. D. (2018). Notes for genera: Basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota). Fungal Diversity, 92, 43–129. https://doi.org/10.1007/s13225-018-0409-5 

Wijayawardene, N. N., Pawłowska, J., Letcher, P. M., Kirk, P. M., Humber, R. A., Schüßler, A., Wrzosek, M., Muszewska, A., Okrasińska, A., Istel, Ł., Gęsiorska, A., Mungai, P., Lateef, A. A., Rajeshkumar, K. C., Singh, R. V., Radek, R., Walther, G., Wagner, L., Walker, C., Wijesundara, D. S. A., Papizadeh, M., Dolatabadi, S., Shenoy, B. D., Tokarev, Y. S., Lumyong, S., & Hyde, K. D. (2018). Notes for genera: Basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota). Fungal Diversity, 92(1), 43–129. https://doi.org/10.1007/s13225-018-0409-5 

Shinde, V. L., Meena, R. M., & Shenoy, B. D. (2018). Phylogenetic characterization of culturable bacteria and fungi associated with tarballs from Betul beach, Goa, India. Marine Pollution Bulletin, 128, 593–600. https://doi.org/10.1016/j.marpolbul.2018.01.064 

Dhandapani, S., Meena, R. M., & Shenoy, B. D. (2018). Detection and molecular characterization of outdoor fungi from the coastal city of Visakhapatnam, India. KAVAKA, 51, 7–10. 

Wang, M. M., Shenoy, B. D., Li, W., & Cai, L. (2017). Molecular phylogeny of Neodevriesia, with two new species and several new combinations. Mycologia, 109(6), 965–974. https://doi.org/10.1080/00275514.2017.1415075 

Wijayawardene, N. N., Hyde, K. D., Rajeshkumar, K. C., Hawksworth, D. L., Madrid, H., Kirk, P. M., Braun, U., Singh, R. V., Crous, P. W., Kukwa, M., Lücking, R., Kurtzman, C. P., Yurkov, A., Haelewaters, D., Aptroot, A., Lumbsch, H. T., Timdal, E., Ertz, D., Etayo, J., Phillips, A. J. L., Groenewald, J. Z., Papizadeh, M., Selbmann, L., Dayarathne, M. C., Weerakoon, G., Jones, E. B. G., Suetrong, S., Tian, Q., Castañeda-Ruiz, R. F., Bahkali, A. H., Pang, K.-L., Tanaka, K., Dai, D. Q., Sakayaroj, J., Hujslová, M., Lombard, L., Shenoy, B. D., Suija, A., Maharachchikumbura, S. S. N., Thambugala, K. M., Wanasinghe, D. N., Sharma, B. O., Gaikwad, S., Pandit, G., Zucconi, L., Onofri, S., Egidi, E., Raja, H. A., Kodsueb, R., Cáceres, M. E. S., Pérez-Ortega, S., Fiuza, P. O., Monteiro, J. S., Vasilyeva, L. N., Shivas, R. G., Prieto, M., Wedin, M., Olariaga, I., Lateef, A. A., Agrawal, Y., Fazeli, S. A. S., Amoozegar, M. A., Zhao, G. Z., Pfliegler, W. P., Sharma, G., Oset, M., Abdel-Wahab, M. A., Takamatsu, S., Bensch, K., de Silva, N. I., De Kesel, A., Karunarathna, A., Boonmee, S., Pfister, D. H., Lu, Y.-Z., Luo, Z.-L., Boonyuen, N., Daranagama, D. A., Senanayake, I. C., Jayasiri, S. C., Samarakoon, M. C., Zeng, X.-Y., Doilom, M., Quijada, L., Rampadarath, S., Heredia, G., Dissanayake, A. J., Jayawardana, R. S., Perera, R. H., Tang, L. Z., Phukhamsakda, C., Hernández-Restrepo, M., Ma, X., Tibpromma, S., Gusmao, L. F. P., Weerahewa, D., & Karunarathna, S. C. (2017). Notes for genera: Ascomycota. Fungal Diversity, 86(1), 1–594. https://doi.org/10.1007/s13225-017-0386-0 

Shinde, V. L., Suneel, V., & Shenoy, B. D. (2017). Diversity of bacteria and fungi associated with tarballs: Recent developments and future prospects. Marine Pollution Bulletin, 117(1–2), 28–33. https://doi.org/10.1016/j.marpolbul.2017.01.067 

Wijayawardene, N. N., Papizadeh, M., Phillips, A. J. L., Wanasinghe, D. N., Bhat, D. J., Weerahewa, H. L. D., Shenoy, B. D., Wang, Y., & Huang, Y. Q. (2017). Mycosphere Essays 19: Recent advances and future challenges in taxonomy of coelomycetous fungi. Mycosphere, 8(7), 934–950. https://doi.org/10.5943/mycosphere/8/7/9 

Sanyal, O., Shinde, V. L., Meena, R. M., Damare, S., & Shenoy, B. D. (2016). The ITS-based phylogeny of fungi associated with tarballs. Marine Pollution Bulletin, 113(1–2), 277–281. https://doi.org/10.1016/j.marpolbul.2016.09.052 

Jayawardena, R. S., Yan, J. Y., Cai, L., Shenoy, B. D., & Sharma, G. (2016). Discovering and dealing with the unknown aspects of Colletotrichum. Mycosphere, 7(8), 1074–1075. https://doi.org/10.5943/mycosphere/si/2c/10 

Sharma, G., & Shenoy, B. D. (2016). Colletotrichum systematics: Past, present and prospects. Mycosphere, 7(8), 1093–1102. https://doi.org/10.5943/mycosphere/si/2c/2 

Khandavilli, R., Meena, R., & Shenoy, B. D. (2016). Fungal phylogenetic diversity in estuarine sediments of Gautami Godavari River, Andhra Pradesh, India. Current Research in Environmental & Applied Mycology, 6(4), 268–276. https://doi.org/10.5943/cream/6/4/4 

Sharma, G., Gryzenhout, M., Hyde, K. D., Pinnaka, A. K., & Shenoy, B. D. (2015). First report of Colletotrichum asianum causing mango anthracnose in South Africa. Plant Disease, 99(5), 725. https://doi.org/10.1094/PDIS-08-13-0837-PDN 

Sharma, G., Pinnaka, A. K., & Shenoy, B. D. (2015). Resolving the Colletotrichum siamense species complex using ApMat marker. Fungal Diversity, 71, 247–264. https://doi.org/10.1007/s13225-014-0312-7

Liu, J. K., Hyde, K. D., Jones, E. B. G., Ariyawansa, H. A., Bhat, D. J., Boonmee, S., Maharachchikumbura, S. S. N., McKenzie, E. H. C., Phookamsak, R., Phukhamsakda, C., Shenoy, B. D., Abdel-Wahab, M. A., Buyck, B., Chen, J., Chethana, K. W. T., Singtripop, C., Dai, D. Q., Dai, Y. C., Daranagama, D. A., Dissanayake, A. J., Doilom, M., D’souza, M. J., Fan, X. L., Goonasekara, I. D., Hirayama, K., Hongsanan, S., Jayasiri, S. C., Jayawardena, R. S., Karunarathna, S. C., Li, W. J., Mapook, A., Norphanphoun, C., Pang, K. L., Perera, R. H., Peršoh, D., Pinruan, U., Senanayake, I. C., Somrithipol, S., Suetrong, S., Tanaka, K., Thambugala, K. M., Tian, Q., Tibpromma, S., Udayanga, D., Wijayawardene, N. N., Wanasinghe, D., Wisitrassameewong, K., Zeng, X. Y., Abdel-Aziz, F. A., Adamčík, S., Bahkali, A. H., Boonyuen, N., Bulgakov, T., Callac, P., Chomnunti, P., Greiner, K., Hashimoto, A., Hofstetter, V., Kang, J. C., Lewis, D., Li, X. H., Liu, X. Z., Liu, Z. Y., Matsumura, M., Mortimer, P. E., Rambold, G., Randrianjohany, E., Sato, G., Sri-Indrasutdhi, V., Tian, C. M., Verbeken, A., von Brackel, W., Wang, Y., Wen, T. C., Xu, J. C., Yan, J. Y., Zhao, R. L., & Camporesi, E. (2015). Fungal diversity notes 1–110: Taxonomic and phylogenetic contributions to fungal species. Fungal Diversity, 72(1), 1–197. https://doi.org/10.1007/s13225-015-0324-y 

Maharachchikumbura, S. S. N., Hyde, K. D., Jones, E. B. G., McKenzie, E. H. C., Huang, S.-K., Abdel-Wahab, M. A., Daranagama, D. A., Dayarathne, M., D’souza, M. J., Goonasekara, I. D., Hongsanan, S., Jayawardena, R. S., Kirk, P. M., Konta, S., Liu, J.-K., Liu, Z.-Y., Norphanphoun, C., Pang, K.-L., Perera, R. H., Senanayake, I. C., Shang, Q., Shenoy, B. D., Xiao, Y., Bahkali, A. H., Kang, J., Somrothipol, S., Suetrong, S., Wen, T., & Xu, J. (2015). Towards a natural classification and backbone tree for Sordariomycetes. Fungal Diversity, 72(1), 199–301. https://doi.org/10.1007/s13225-015-0331-z

Agrawal, Y., Khatri, I., Subramanian, S., & Shenoy, B. D. (2015). Genome sequence, comparative analysis, and evolutionary insights into chitinases of entomopathogenic fungus Hirsutella thompsonii. Genome Biology and Evolution, 7(3), 916–930. https://doi.org/10.1093/gbe/evv037 

Sharma, G., Pinnaka, A. K., & Shenoy, B. D. (2015). Resolving the Colletotrichum siamense species complex using ApMat marker. Fungal Diversity, 71, 247–264. https://doi.org/10.1007/s13225-014-0312-7 

Sharma, G., Pinnaka, A.K., & Shenoy, B.D. (2014). Infra-specific diversity of Colletotrichum truncatum associated with chilli anthracnose in India based on microsatellite marker analysis. Archives of Phytopathology and Plant Protection, 47(20), 2509–2523. https://doi.org/10.1080/03235408.2014.880577 

Sharma, G., & Shenoy, B. D. (2013). Colletotrichum fructicola and C. siamense are involved in chilli anthracnose in India. Archives of Phytopathology and Plant Protection, 47(10), 1179–1194. https://doi.org/10.1080/03235408.2013.833749 

Agrawal, Y., Mual, P., & Shenoy, B. D. (2014). Multi-gene genealogies reveal cryptic species Beauveria rudraprayagi sp. nov. from India. Mycosphere, 5(6), 719–736. https://doi.org/10.5943/mycosphere/5/6/3 

Agrawal, Y., Mual, P., & Shenoy, B. D. (2014). Infraspecific diversity of Beauveria bassiana from India based on DNA microsatellite markers. Mycosphere, 5(5), 635–645. https://doi.org/10.5943/mycosphere/5/5/4 

Sharma, G., & Shenoy, B. D. (2013). Multigene sequence-based identification of Colletotrichum cymbidiicola, C. karstii and C. phyllanthi from India. Czech Mycology, 65(1), 79–88. 

Sharma, G., Kumar, N., Weir, B. S., Hyde, K. D., & Shenoy, B. D. (2013). The ApMat marker can resolve Colletotrichum species: A case study with Mangifera indica. Fungal Diversity, 61(1), 117–138. https://doi.org/10.1007/s13225-013-0247-4
 

Sharma, G., Pinnaka, A. K., & Shenoy, B. D. (2013). ITS-based diversity of Colletotrichum from India. Current Research in Environmental & Applied Mycology, 3(2), 194–220. https://doi.org/10.5943/cream/3/2/3 

Arora, P. K., Sharma, A., Mehta, R., Shenoy, B. D., Srivastava, A., & Singh, V. P. (2012). Metabolism of 4-chloro-2-nitrophenol in a Gram-positive bacterium, Exiguobacterium sp. PMA. Microbial Cell Factories, 11(1), 150. https://doi.org/10.1186/1475-2859-11-150 

Srivastava, P. K., Shenoy, B. D., Gupta, M., Vaish, A., Mannan, S., Singh, N., Tewari, S. K., & Tripathi, R. D. (2012). Stimulatory effects of arsenic-tolerant soil fungi on plant growth promotion and soil properties. Microbes and Environments, 27(4), 477–482. https://doi.org/10.1264/jsme2.me11316 

Bengtsson, J., Eriksson, K. M., Hartmann, M., Wang, Z., Shenoy, B. D., Grelet, G.-A., Abarenkov, K., Petri, A., Alm Rosenblad, M., & Nilsson, R. H. (2011). Metaxa: A software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets. Antonie van Leeuwenhoek, 100(3), 471–475. https://doi.org/10.1007/s10482-011-9598-6 

Shenoy, B. D., Jeewon, R., Wang, H., Kaur, A., Ho, W. H., Bhat, D. J., Crous, P. W., & Hyde, K. D. (2010). Sequence data reveals phylogenetic affinities of fungal anamorphs Bahusutrabeeja, Diplococcium, Natarajania, Paliphora, Polyschema, Rattania and Spadicoides. Fungal Diversity, 44(1), 161–169. https://doi.org/10.1007/s13225-010-0059-8 

Pratibha, J., Kaur, A., Shenoy, B. D., & Bhat, D. J. (2010). Caliciopsis indica sp. nov. from India. Mycosphere, 1, 65–72. 

Shenoy, B. D., Jeewon, R., & Hyde, K. D. (2007). Impact of DNA sequence data on the taxonomy of anamorphic fungi. Fungal Diversity, 26, 1–54. 

Shenoy, B. D., Jeewon, R., Lam, W. H., Bhat, D. J., Than, P. P., Taylor, P. W. J., & Hyde, K. D. (2007). Morpho-molecular characterisation and epitypification of Colletotrichum capsici (Glomerellaceae, Sordariomycetes), the causative agent of anthracnose in chilli. Fungal Diversity, 27, 197–211. 

Shenoy, B. D., Jeewon, R., Wu, W. P., Bhat, D. J., & Hyde, K. D. (2006). Ribosomal and RPB2 DNA sequence analyses suggest that Sporidesmium and morphologically similar genera are polyphyletic. Mycological Research, 110(8), 916–928. https://doi.org/10.1016/j.mycres.2006.06.004 

Gawas, P., Shenoy, B. D., Hyde, K. D., & Bhat, D. J. (2006). Echinosphaeria macrospora sp. nov., teleomorph of Vermiculariopsiella endophytica sp. nov. Cryptogamie, Mycologie, 27(1), 11–20. 

Shenoy, B. D., Jeewon, R., & Hyde, K. D. (2005). Oxydothis bambusicola, a new ascomycete with a huge subapical ascal ring found on bamboo in Hong Kong. Nova Hedwigia, 80(3–4), 511–518. 

Shenoy, B. D., Vijaykrishna, D., Cai, L., Jeewon, R., Bhat, D. J., & Hyde, K. D. (2005). Pseudohalonectria miscanthicola sp. nov. and three interesting fungi from tropics. Cryptogamie, Mycologie, 26(2), 123–132. 

Pratibha, J., Gawas, P., Shenoy, B. D., Hyde, K. D., & Bhat, D. J. (2005). Chalara indica sp. nov. and Sorocybe indicus sp. nov. from India. Cryptogamie, Mycologie, 26(2), 97–103. 

Hyde, K. D., Jeewon, R., Bahl, J., Bhilabut, B., Bussaban, B., Cai, L., Shenoy, B. D., Kodseub, R., Lam, C. W. H., Lam, D. M., Photita, W., Promputtha, I., Tang, M. C., Thongkantha, S., Vijaykrishna, D., & Yeung, S. Y. (2004, July). Fungal studies at University of Hong Kong. Paper presented at the 2004 Annual Meeting of the Mycological Society of America, Asheville, NC. https://hub.hku.hk/handle/10722/287493